IL_9H6Y_010

3D structure

PDB id

9H6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGGU*AA

Length

6 nucleotides

Bulged bases

9H6Y|1|2|G|113, 9H6Y|1|2|G|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H6Y_010 not in the Motif Atlas

Homologous match to IL_9H3G_163

Geometric discrepancy: 0.2179

The information below is about IL_9H3G_163

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71421.6

Basepair signature

cWW-cWW

Number of instances in this motif group

38

Unit IDs

9H6Y|1|2|U|112
9H6Y|1|2|G|113
9H6Y|1|2|G|114
9H6Y|1|2|U|115
*
9H6Y|1|2|A|338
9H6Y|1|2|A|339

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein eS4

Chain K

Small ribosomal subunit protein eS8

Chain N

Small ribosomal subunit protein uS17