IL_9H6Y_020

3D structure

PDB id

9H6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

9H6Y|1|2|U|358, 9H6Y|1|2|C|359

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H6Y_020 not in the Motif Atlas

Geometric match to IL_8GLP_211

Geometric discrepancy: 0.1284

The information below is about IL_8GLP_211

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01372.4

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

9H6Y|1|2|U|356
9H6Y|1|2|U|357
9H6Y|1|2|U|358
9H6Y|1|2|C|359
9H6Y|1|2|G|360
9H6Y|1|2|A|361
*
9H6Y|1|2|U|383
9H6Y|1|2|G|384

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

Small ribosomal subunit protein eS8

Chain N

Small ribosomal subunit protein uS17