IL_9H6Y_021

3D structure

PDB id

9H6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

9H6Y|1|2|U|418

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H6Y|1|2|G|401
9H6Y|1|2|G|402
9H6Y|1|2|G|403
*
9H6Y|1|2|C|414
9H6Y|1|2|G|415
9H6Y|1|2|A|416
9H6Y|1|2|U|417
9H6Y|1|2|U|418
9H6Y|1|2|C|419

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein eS4

Chain L

Small ribosomal subunit protein uS4

Chain Z

Small ribosomal subunit protein uS12