IL_9H6Y_040

3D structure

PDB id

9H6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCUCUCGGCG*CCCGAAG

Length

17 nucleotides

Bulged bases

9H6Y|1|2|G|748

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H6Y|1|2|C|741
9H6Y|1|2|C|742
9H6Y|1|2|U|743
9H6Y|1|2|C|744
9H6Y|1|2|U|745
9H6Y|1|2|C|746
9H6Y|1|2|G|747
9H6Y|1|2|G|748
9H6Y|1|2|C|749
9H6Y|1|2|G|750
*
9H6Y|1|2|C|786
9H6Y|1|2|C|787
9H6Y|1|2|C|788
9H6Y|1|2|G|789
9H6Y|1|2|A|790
9H6Y|1|2|A|791
9H6Y|1|2|G|792

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein eS4

Chain I

Small ribosomal subunit protein eS6

Chain J

Small ribosomal subunit protein eS7

Chain N

Small ribosomal subunit protein uS17