IL_9H6Y_043

3D structure

PDB id

9H6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAAAAAUU*ACCGCAGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H6Y|1|2|G|803
9H6Y|1|2|A|804
9H6Y|1|2|A|805
9H6Y|1|2|A|806
9H6Y|1|2|A|807
9H6Y|1|2|A|808
9H6Y|1|2|A|809
9H6Y|1|2|U|810
9H6Y|1|2|U|811
*
9H6Y|1|2|A|845
9H6Y|1|2|C|846
9H6Y|1|2|C|847
9H6Y|1|2|G|848
9H6Y|1|2|C|849
9H6Y|1|2|A|850
9H6Y|1|2|G|851
9H6Y|1|2|C|852

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein eS4

Chain L

Small ribosomal subunit protein uS4

Chain N

Small ribosomal subunit protein uS17

Chain Y

Small ribosomal subunit protein uS8