IL_9H6Y_049

3D structure

PDB id

9H6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

9H6Y|1|2|G|929

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H6Y_049 not in the Motif Atlas

Homologous match to IL_9PN5_185

Geometric discrepancy: 0.1865

The information below is about IL_9PN5_185

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

9H6Y|1|2|C|927
9H6Y|1|2|G|928
9H6Y|1|2|G|929
9H6Y|1|2|G|930
9H6Y|1|2|G|931
*
9H6Y|1|2|C|1003
9H6Y|1|2|A|1004
9H6Y|1|2|A|1005
9H6Y|1|2|G|1006

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

Small ribosomal subunit protein eS1

Chain P

Small ribosomal subunit protein uS15

Chain b

Small ribosomal subunit protein eS26