IL_9H6Y_053

3D structure

PDB id

9H6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H6Y_053 not in the Motif Atlas

Homologous match to IL_9PN5_190

Geometric discrepancy: 0.0927

The information below is about IL_9PN5_190

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05821.4

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

21

Unit IDs

9H6Y|1|2|C|1043
9H6Y|1|2|G|1044
9H6Y|1|2|A|1045
9H6Y|1|2|A|1046
9H6Y|1|2|G|1047
*
9H6Y|1|2|C|1063
9H6Y|1|2|G|1064
9H6Y|1|2|U|1065
9H6Y|1|2|A|1066
9H6Y|1|2|G|1067

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

Small ribosomal subunit protein uS11

Chain b

Small ribosomal subunit protein eS26

Chain o

Eukaryotic translation initiation factor 5