IL_9H6Y_057

3D structure

PDB id

9H6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

9H6Y|1|2|C|1105

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H6Y_057 not in the Motif Atlas

Geometric match to IL_9E6Q_038

Geometric discrepancy: 0.3924

The information below is about IL_9E6Q_038

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

72

Unit IDs

9H6Y|1|2|G|1104
9H6Y|1|2|C|1105
9H6Y|1|2|G|1106
*
9H6Y|1|2|C|1119
9H6Y|1|2|C|1120

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

Small ribosomal subunit protein uS2

Chain D

Small ribosomal subunit protein eS1

Chain T

Small ribosomal subunit protein eS17

Chain c

Small ribosomal subunit protein eS27