IL_9H6Y_066

3D structure

PDB id

9H6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GACAGGAUUG*CUCGAUUC

Length

18 nucleotides

Bulged bases

9H6Y|1|2|G|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H6Y|1|2|G|1277
9H6Y|1|2|A|1278
9H6Y|1|2|C|1279
9H6Y|1|2|A|1280
9H6Y|1|2|G|1281
9H6Y|1|2|G|1282
9H6Y|1|2|A|1283
9H6Y|1|2|U|1284
9H6Y|1|2|U|1285
9H6Y|1|2|G|1286
*
9H6Y|1|2|C|1305
9H6Y|1|2|U|1306
9H6Y|1|2|C|1307
9H6Y|1|2|G|1308
9H6Y|1|2|A|1309
9H6Y|1|2|U|1310
9H6Y|1|2|U|1311
9H6Y|1|2|C|1312

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain M

Small ribosomal subunit protein eS10

Chain O

Small ribosomal subunit protein eS12

Chain e

Small ribosomal subunit protein uS14

Chain f

Ubiquitin-ribosomal protein eS31 fusion protein