IL_9H6Y_069

3D structure

PDB id

9H6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

9H6Y|1|2|U|1322

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H6Y_069 not in the Motif Atlas

Homologous match to IL_9PN5_203

Geometric discrepancy: 0.1584

The information below is about IL_9PN5_203

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

192

Unit IDs

9H6Y|1|2|G|1321
9H6Y|1|2|U|1322
9H6Y|1|2|G|1323
*
9H6Y|1|2|C|1498
9H6Y|1|2|C|1499

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain M

Small ribosomal subunit protein eS10

Chain e

Small ribosomal subunit protein uS14

Chain f

Ubiquitin-ribosomal protein eS31 fusion protein

Chain j

Eukaryotic translation initiation factor 4C