IL_9H6Y_070
3D structure
- PDB id
- 9H6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGCAU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 9H6Y|1|2|C|1327
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9H6Y_070 not in the Motif Atlas
- Geometric match to IL_9PN5_204
- Geometric discrepancy: 0.1195
- The information below is about IL_9PN5_204
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_82453.4
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
9H6Y|1|2|U|1325
9H6Y|1|2|G|1326
9H6Y|1|2|C|1327
9H6Y|1|2|A|1328
9H6Y|1|2|U|1329
*
9H6Y|1|2|A|1494
9H6Y|1|2|U|1495
9H6Y|1|2|G|1496
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain F
- Small ribosomal subunit protein uS3
- Chain M
- Small ribosomal subunit protein eS10
- Chain W
- Small ribosomal subunit protein uS10
- Chain e
- Small ribosomal subunit protein uS14
- Chain f
- Ubiquitin-ribosomal protein eS31 fusion protein
- Chain j
- Eukaryotic translation initiation factor 4C
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