IL_9H6Y_081

3D structure

PDB id

9H6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCCG*CG

Length

6 nucleotides

Bulged bases

9H6Y|1|2|C|1415

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H6Y_081 not in the Motif Atlas

Geometric match to IL_4WF9_026

Geometric discrepancy: 0.2813

The information below is about IL_4WF9_026

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.11

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

9H6Y|1|2|C|1413
9H6Y|1|2|C|1414
9H6Y|1|2|C|1415
9H6Y|1|2|G|1416
*
9H6Y|1|2|C|1423
9H6Y|1|2|G|1424

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

Small ribosomal subunit protein uS9

Chain V

Small ribosomal subunit protein eS19