IL_9H6Y_082
3D structure
- PDB id
- 9H6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- ACU*AUU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9H6Y_082 not in the Motif Atlas
- Geometric match to IL_3SZX_002
- Geometric discrepancy: 0.1183
- The information below is about IL_3SZX_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_71625.6
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 81
Unit IDs
9H6Y|1|2|A|1532
9H6Y|1|2|C|1533
9H6Y|1|2|U|1534
*
9H6Y|1|2|A|1589
9H6Y|1|2|U|1590
9H6Y|1|2|U|1591
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain H
- Small ribosomal subunit protein uS7
- Chain S
- Small ribosomal subunit protein uS9
- Chain U
- Small ribosomal subunit protein uS13
- Chain V
- Small ribosomal subunit protein eS19
- Chain n
- Small ribosomal subunit protein eS25
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