IL_9H6Y_092
3D structure
- PDB id
- 9H6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAU*AGAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9H6Y_092 not in the Motif Atlas
- Homologous match to IL_9H3G_238
- Geometric discrepancy: 0.2012
- The information below is about IL_9H3G_238
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.5
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 50
Unit IDs
9H6Y|1|2|C|1712
9H6Y|1|2|G|1713
9H6Y|1|2|A|1714
9H6Y|1|2|U|1715
*
9H6Y|1|2|A|1807
9H6Y|1|2|G|1808
9H6Y|1|2|A|1809
9H6Y|1|2|G|1810
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain k
- ATP binding cassette subfamily E member 1
- Chain l
- Small ribosomal subunit protein eS32
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