IL_9H6Y_097

3D structure

PDB id

9H6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H6Y_097 not in the Motif Atlas

Homologous match to IL_9PN5_231

Geometric discrepancy: 0.1138

The information below is about IL_9PN5_231

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15190.5

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

29

Unit IDs

9H6Y|1|2|C|1737
9H6Y|1|2|G|1738
9H6Y|1|2|G|1739
9H6Y|1|2|A|1740
9H6Y|1|2|U|1741
*
9H6Y|1|2|A|1782
9H6Y|1|2|G|1783
9H6Y|1|2|A|1784
9H6Y|1|2|A|1785
9H6Y|1|2|G|1786

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

Small ribosomal subunit protein eS6

Chain K

Small ribosomal subunit protein eS8