IL_9H74_033

3D structure

PDB id

9H74 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex with eIF3 (LS48S-eIF3 IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

9H74|1|2|U|597

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H74_033 not in the Motif Atlas

Homologous match to IL_9H3G_186

Geometric discrepancy: 0.2567

The information below is about IL_9H3G_186

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

173

Unit IDs

9H74|1|2|G|596
9H74|1|2|U|597
9H74|1|2|C|598
*
9H74|1|2|G|625
9H74|1|2|C|626

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

Ribosomal protein S3

Chain i

40S ribosomal protein S30