IL_9H74_077

3D structure

PDB id

9H74 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex with eIF3 (LS48S-eIF3 IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UACG*CCCA

Length

8 nucleotides

Bulged bases

9H74|1|2|C|1433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H74_077 not in the Motif Atlas

Geometric match to IL_9UJU_004

Geometric discrepancy: 0.3509

The information below is about IL_9UJU_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49140.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

9H74|1|2|U|1404
9H74|1|2|A|1405
9H74|1|2|C|1406
9H74|1|2|G|1407
*
9H74|1|2|C|1431
9H74|1|2|C|1432
9H74|1|2|C|1433
9H74|1|2|A|1434

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

Ribosomal protein S16

Chain W

40S ribosomal protein uS10