IL_9H74_080

3D structure

PDB id

9H74 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex with eIF3 (LS48S-eIF3 IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCCG*CG

Length

6 nucleotides

Bulged bases

9H74|1|2|C|1415

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H74_080 not in the Motif Atlas

Geometric match to IL_4WF9_026

Geometric discrepancy: 0.2807

The information below is about IL_4WF9_026

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.10

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

9H74|1|2|C|1413
9H74|1|2|C|1414
9H74|1|2|C|1415
9H74|1|2|G|1416
*
9H74|1|2|C|1423
9H74|1|2|G|1424

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

Ribosomal protein S16

Chain V

40S ribosomal protein eS19