IL_9H74_086

3D structure

PDB id

9H74 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex with eIF3 (LS48S-eIF3 IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

9H74|1|2|C|1696, 9H74|1|2|A|1829

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H74_086 not in the Motif Atlas

Homologous match to IL_9H3G_233

Geometric discrepancy: 0.2087

The information below is about IL_9H3G_233

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

7

Unit IDs

9H74|1|2|C|1695
9H74|1|2|C|1696
9H74|1|2|G|1697
*
9H74|1|2|C|1827
9H74|1|2|A|1828
9H74|1|2|A|1829
9H74|1|2|G|1830

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Transfer RNA; tRNA

Chain 3

Linear mRNA

Chain b

40S ribosomal protein S26

Chain j

Eukaryotic translation initiation factor 1A, X-chromosomal