IL_9H9H_023

3D structure

PDB id

9H9H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 1 30S-IF1-IF2-IF3-GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H9H_023 not in the Motif Atlas

Geometric match to IL_5J7L_023

Geometric discrepancy: 0.1316

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

9H9H|1|A|G|450
9H9H|1|A|A|451
9H9H|1|A|A|452
9H9H|1|A|G|453
9H9H|1|A|G|454
9H9H|1|A|G|455
*
9H9H|1|A|C|477
9H9H|1|A|A|478
9H9H|1|A|U|479
9H9H|1|A|U|480
9H9H|1|A|G|481
9H9H|1|A|A|482
9H9H|1|A|C|483

Current chains

Chain A

16S RNA (1534-MER)

Nearby chains

Chain P

Small ribosomal subunit protein bS16