IL_9H9J_012

3D structure

PDB id

9H9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 2 (BODY) 30S-IF1-IF3-tRNA-GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

9H9J|1|A|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H9J_012 not in the Motif Atlas

Geometric match to IL_5J7L_012

Geometric discrepancy: 0.1465

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

9H9J|1|A|G|147
9H9J|1|A|G|148
9H9J|1|A|A|149
9H9J|1|A|U|150
9H9J|1|A|A|151
9H9J|1|A|A|152
9H9J|1|A|C|153
*
9H9J|1|A|G|168
9H9J|1|A|C|169
9H9J|1|A|U|170
9H9J|1|A|A|171
9H9J|1|A|A|172
9H9J|1|A|U|173
9H9J|1|A|A|174
9H9J|1|A|C|175

Current chains

Chain A

16S RNA (1078-MER)

Nearby chains

Chain T

Small ribosomal subunit protein bS20