IL_9H9J_031

3D structure

PDB id

9H9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 2 (BODY) 30S-IF1-IF3-tRNA-GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H9J_031 not in the Motif Atlas

Geometric match to IL_4LFB_027

Geometric discrepancy: 0.0802

The information below is about IL_4LFB_027

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_74641.1

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

32

Unit IDs

9H9J|1|A|G|654
9H9J|1|A|A|655
*
9H9J|1|A|U|751
9H9J|1|A|G|752
9H9J|1|A|A|753
9H9J|1|A|C|754

Current chains

Chain A

16S RNA (1078-MER)

Nearby chains

Chain H

Small ribosomal subunit protein uS8

Chain O

Small ribosomal subunit protein uS15