IL_9H9L_048

3D structure

PDB id

9H9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 3 (BODY) 30S-tRNA-GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H9L_048 not in the Motif Atlas

Geometric match to IL_5C5W_002

Geometric discrepancy: 0.2102

The information below is about IL_5C5W_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

9H9L|1|A|G|1422
9H9L|1|A|G|1423
9H9L|1|A|U|1424
*
9H9L|1|A|A|1476
9H9L|1|A|U|1477
9H9L|1|A|U|1478

Current chains

Chain A

16S RNA (1078-MER)

Nearby chains