IL_9H9M_009

3D structure

PDB id

9H9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 4 (HEAD) 30S-GE81112 (weak residual tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H9M_009 not in the Motif Atlas

Geometric match to IL_5J7L_050

Geometric discrepancy: 0.108

The information below is about IL_5J7L_050

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

9H9M|1|1|G|1061
9H9M|1|1|U|1062
9H9M|1|1|C|1063
*
9H9M|1|1|G|1193
9H9M|1|1|U|1194
9H9M|1|1|C|1195

Current chains

Chain 1

16S RNA (1542-MER)

Nearby chains

Chain C

Small ribosomal subunit protein uS3

Chain J

Small ribosomal subunit protein uS10

Chain N

Small ribosomal subunit protein uS14