IL_9H9M_016

3D structure

PDB id

9H9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 4 (HEAD) 30S-GE81112 (weak residual tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H9M_016 not in the Motif Atlas

Geometric match to IL_5J7L_057

Geometric discrepancy: 0.0884

The information below is about IL_5J7L_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9H9M|1|1|C|1303
9H9M|1|1|G|1304
9H9M|1|1|G|1305
9H9M|1|1|A|1306
9H9M|1|1|U|1307
9H9M|1|1|U|1308
*
9H9M|1|1|A|1329
9H9M|1|1|U|1330
9H9M|1|1|G|1331
9H9M|1|1|A|1332
9H9M|1|1|A|1333
9H9M|1|1|G|1334

Current chains

Chain 1

16S RNA (1542-MER)

Nearby chains

Chain M

Small ribosomal subunit protein uS13