IL_9H9N_024

3D structure

PDB id

9H9N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 4 (BODY) 30S-GE81112 (weak residual tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGG*CAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H9N_024 not in the Motif Atlas

Geometric match to IL_8P9A_456

Geometric discrepancy: 0.1304

The information below is about IL_8P9A_456

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

9H9N|1|A|G|453
9H9N|1|A|G|454
9H9N|1|A|G|455
*
9H9N|1|A|C|477
9H9N|1|A|A|478
9H9N|1|A|U|479

Current chains

Chain A

16S RNA (1078-MER)

Nearby chains

Chain P

Small ribosomal subunit protein bS16