IL_9H9N_033

3D structure

PDB id

9H9N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 4 (BODY) 30S-GE81112 (weak residual tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UC*GAA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H9N_033 not in the Motif Atlas

Geometric match to IL_8CRE_091

Geometric discrepancy: 0.1573

The information below is about IL_8CRE_091

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

9H9N|1|A|U|659
9H9N|1|A|C|660
*
9H9N|1|A|G|745
9H9N|1|A|A|746
9H9N|1|A|A|747

Current chains

Chain A

16S RNA (1078-MER)

Nearby chains

Chain O

Small ribosomal subunit protein uS15