IL_9H9N_037

3D structure

PDB id

9H9N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 4 (BODY) 30S-GE81112 (weak residual tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGAG*UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H9N_037 not in the Motif Atlas

Geometric match to IL_4LFB_032

Geometric discrepancy: 0.0786

The information below is about IL_4LFB_032

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.3

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

9H9N|1|A|G|774
9H9N|1|A|G|775
9H9N|1|A|G|776
9H9N|1|A|A|777
9H9N|1|A|G|778
*
9H9N|1|A|U|804
9H9N|1|A|C|805

Current chains

Chain A

16S RNA (1078-MER)

Nearby chains

Chain K

Small ribosomal subunit protein uS11