IL_9H9N_048

3D structure

PDB id

9H9N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 4 (BODY) 30S-GE81112 (weak residual tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AAGAAG*CCACU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H9N_048 not in the Motif Atlas

Geometric match to IL_8GLP_051

Geometric discrepancy: 0.2577

The information below is about IL_8GLP_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47352.2

Basepair signature

cWW-cWW-tSH-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

9H9N|1|A|A|1430
9H9N|1|A|A|1431
9H9N|1|A|G|1432
9H9N|1|A|A|1433
9H9N|1|A|A|1434
9H9N|1|A|G|1435
*
9H9N|1|A|C|1466
9H9N|1|A|C|1467
9H9N|1|A|A|1468
9H9N|1|A|C|1469
9H9N|1|A|U|1470

Current chains

Chain A

16S RNA (1078-MER)

Nearby chains

Chain T

Small ribosomal subunit protein bS20