IL_9HA1_029

3D structure

PDB id

9HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_(L22)- precursor states supplemented with Api137 - Canonical PET exit Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.17 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HA1_029 not in the Motif Atlas

Homologous match to IL_9DFE_048

Geometric discrepancy: 0.3256

The information below is about IL_9DFE_048

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.1

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9HA1|1|A|A|1262
9HA1|1|A|U|1263
9HA1|1|A|A|1264
9HA1|1|A|A|1265
9HA1|1|A|G|1266
9HA1|1|A|U|1267
9HA1|1|A|A|1268
9HA1|1|A|A|1269
*
9HA1|1|A|U|2011
9HA1|1|A|G|2012
9HA1|1|A|A|2013
9HA1|1|A|A|2014
9HA1|1|A|A|2015
9HA1|1|A|U|2016
9HA1|1|A|U|2017

Current chains

Chain A

23S ribosomal RNA

Nearby chains