3D structure

PDB id
9HA1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pooled 50S subunit C_(L22)- precursor states supplemented with Api137 - Canonical PET exit Api137
Experimental method
ELECTRON MICROSCOPY
Resolution
4.17 Å

Loop

Sequence
GAAG*CCUGC
Length
9 nucleotides
Bulged bases
9HA1|1|A|U|1559
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9HA1_037 not in the Motif Atlas
Homologous match to IL_5J7L_296
Geometric discrepancy: 0.3148
The information below is about IL_5J7L_296
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_58112.2
Basepair signature
cWW-cWW-L-R-cWW
Number of instances in this motif group
4

Unit IDs

9HA1|1|A|G|1432
9HA1|1|A|A|1433
9HA1|1|A|A|1434
9HA1|1|A|G|1435
*
9HA1|1|A|C|1557
9HA1|1|A|C|1558
9HA1|1|A|U|1559
9HA1|1|A|G|1560
9HA1|1|A|C|1561

Current chains

Chain A
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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