IL_9HA2_006

3D structure

PDB id

9HA2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_(L22)- precursor states supplemented with Api137 - Alternative PET exit Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.17 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HA2_006 not in the Motif Atlas

Homologous match to IL_7A0S_006

Geometric discrepancy: 0.283

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.1

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9HA2|1|A|G|188
9HA2|1|A|G|189
9HA2|1|A|A|190
9HA2|1|A|A|191
9HA2|1|A|C|192
9HA2|1|A|U|193
9HA2|1|A|G|194
*
9HA2|1|A|C|201
9HA2|1|A|U|202
9HA2|1|A|A|203
9HA2|1|A|A|204
9HA2|1|A|G|205
9HA2|1|A|U|206
9HA2|1|A|A|207
9HA2|1|A|C|208

Current chains

Chain A

23S ribosomal RNA

Nearby chains