IL_9HA2_038

3D structure

PDB id

9HA2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_(L22)- precursor states supplemented with Api137 - Alternative PET exit Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.17 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

9HA2|1|A|U|1554

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HA2_038 not in the Motif Atlas

Homologous match to IL_5J7L_297

Geometric discrepancy: 0.2143

The information below is about IL_5J7L_297

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9HA2|1|A|C|1437
9HA2|1|A|U|1438
9HA2|1|A|A|1439
9HA2|1|A|U|1440
*
9HA2|1|A|A|1551
9HA2|1|A|A|1552
9HA2|1|A|A|1553
9HA2|1|A|U|1554
9HA2|1|A|G|1555

Current chains

Chain A

23S ribosomal RNA

Nearby chains