IL_9HA3_006

3D structure

PDB id

9HA3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_(L22)-~H61 precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.62 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HA3_006 not in the Motif Atlas

Homologous match to IL_7A0S_006

Geometric discrepancy: 0.3336

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

9HA3|1|A|G|188
9HA3|1|A|G|189
9HA3|1|A|A|190
9HA3|1|A|A|191
9HA3|1|A|C|192
9HA3|1|A|U|193
9HA3|1|A|G|194
*
9HA3|1|A|C|201
9HA3|1|A|U|202
9HA3|1|A|A|203
9HA3|1|A|A|204
9HA3|1|A|G|205
9HA3|1|A|U|206
9HA3|1|A|A|207
9HA3|1|A|C|208

Current chains

Chain A

23S ribosomal RNA

Nearby chains