IL_9HA3_034

3D structure

PDB id

9HA3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_(L22)-~H61 precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.62 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HA3_034 not in the Motif Atlas

Geometric match to IL_6CZR_139

Geometric discrepancy: 0.1951

The information below is about IL_6CZR_139

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.6

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

28

Unit IDs

9HA3|1|A|G|1310
9HA3|1|A|G|1311
9HA3|1|A|U|1312
9HA3|1|A|U|1313
*
9HA3|1|A|A|1603
9HA3|1|A|C|1604

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34

Chain T

Large ribosomal subunit protein uL23