IL_9HA3_058

3D structure

PDB id

9HA3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_(L22)-~H61 precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.62 Å

Loop

Sequence

CUAGUAC*GGACCGG

Length

14 nucleotides

Bulged bases

9HA3|1|A|G|2668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HA3_058 not in the Motif Atlas

Homologous match to IL_5J7L_346

Geometric discrepancy: 0.4567

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9HA3|1|A|C|2652
9HA3|1|A|U|2653
9HA3|1|A|A|2654
9HA3|1|A|G|2655
9HA3|1|A|U|2656
9HA3|1|A|A|2657
9HA3|1|A|C|2658
*
9HA3|1|A|G|2663
9HA3|1|A|G|2664
9HA3|1|A|A|2665
9HA3|1|A|C|2666
9HA3|1|A|C|2667
9HA3|1|A|G|2668
9HA3|1|A|G|2669

Current chains

Chain A

23S ribosomal RNA

Nearby chains