3D structure

PDB id
9HA4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pooled 50S subunit C-CP_(L22)- precursor states supplemented with Api137
Experimental method
ELECTRON MICROSCOPY
Resolution
4.26 Å

Loop

Sequence
GC*GAC
Length
5 nucleotides
Bulged bases
9HA4|1|A|A|443
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9HA4_002 not in the Motif Atlas
Homologous match to IL_5J7L_246
Geometric discrepancy: 0.1508
The information below is about IL_5J7L_246
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.6
Basepair signature
cWW-L-cWW
Number of instances in this motif group
130

Unit IDs

9HA4|1|A|G|36
9HA4|1|A|C|37
*
9HA4|1|A|G|442
9HA4|1|A|A|443
9HA4|1|A|C|444

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain E
Large ribosomal subunit protein uL4
Chain Q
Large ribosomal subunit protein bL20

Coloring options:


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