IL_9HA4_020

3D structure

PDB id

9HA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C-CP_(L22)- precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.26 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

9HA4|1|A|U|846, 9HA4|1|A|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HA4_020 not in the Motif Atlas

Homologous match to IL_5J7L_399

Geometric discrepancy: 0.4014

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

9HA4|1|A|A|844
9HA4|1|A|A|845
9HA4|1|A|U|846
9HA4|1|A|U|847
9HA4|1|A|C|848
*
9HA4|1|A|G|930
9HA4|1|A|U|931
9HA4|1|A|U|932
9HA4|1|A|A|933
9HA4|1|A|U|934

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Z

Large ribosomal subunit protein uL30