IL_9HA4_026

3D structure

PDB id

9HA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C-CP_(L22)- precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.26 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

9HA4|1|A|A|1156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HA4_026 not in the Motif Atlas

Homologous match to IL_5J7L_277

Geometric discrepancy: 0.199

The information below is about IL_5J7L_277

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

9HA4|1|A|C|998
9HA4|1|A|U|999
9HA4|1|A|A|1000
9HA4|1|A|A|1001
9HA4|1|A|G|1002
*
9HA4|1|A|C|1153
9HA4|1|A|G|1154
9HA4|1|A|A|1155
9HA4|1|A|A|1156
9HA4|1|A|G|1157

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain Q

Large ribosomal subunit protein bL20

Chain R

Large ribosomal subunit protein bL21

Chain Z

Large ribosomal subunit protein uL30