IL_9HA4_031

3D structure

PDB id

9HA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C-CP_(L22)- precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.26 Å

Loop

Sequence

GUAAG*UAUC

Length

9 nucleotides

Bulged bases

9HA4|1|A|A|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HA4_031 not in the Motif Atlas

Homologous match to IL_5J7L_287

Geometric discrepancy: 0.3211

The information below is about IL_5J7L_287

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_91920.1

Basepair signature

cWW-cWW-tHH-cWW

Number of instances in this motif group

1

Unit IDs

9HA4|1|A|G|1202
9HA4|1|A|U|1203
9HA4|1|A|A|1204
9HA4|1|A|A|1205
9HA4|1|A|G|1206
*
9HA4|1|A|U|1240
9HA4|1|A|A|1241
9HA4|1|A|U|1242
9HA4|1|A|C|1243

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain L

Large ribosomal subunit protein uL15