IL_9HA4_050

3D structure

PDB id

9HA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C-CP_(L22)- precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.26 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

9HA4|1|A|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HA4_050 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.2009

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9HA4|1|A|U|1712
9HA4|1|A|A|1713
9HA4|1|A|U|1714
9HA4|1|A|G|1715
9HA4|1|A|U|1716
9HA4|1|A|A|1717
9HA4|1|A|G|1718
*
9HA4|1|A|U|1742
9HA4|1|A|G|1743
9HA4|1|A|A|1744
9HA4|1|A|A|1745
9HA4|1|A|A|1746

Current chains

Chain A

23S ribosomal RNA

Nearby chains