IL_9HA5_006

3D structure

PDB id

9HA5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_L2 precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HA5_006 not in the Motif Atlas

Homologous match to IL_7A0S_006

Geometric discrepancy: 0.1421

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

9HA5|1|A|G|188
9HA5|1|A|G|189
9HA5|1|A|A|190
9HA5|1|A|A|191
9HA5|1|A|C|192
9HA5|1|A|U|193
9HA5|1|A|G|194
*
9HA5|1|A|C|201
9HA5|1|A|U|202
9HA5|1|A|A|203
9HA5|1|A|A|204
9HA5|1|A|G|205
9HA5|1|A|U|206
9HA5|1|A|A|207
9HA5|1|A|C|208

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain L

Large ribosomal subunit protein uL15