IL_9HA5_024

3D structure

PDB id

9HA5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_L2 precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGGGUAG*CGAAUAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HA5_024 not in the Motif Atlas

Homologous match to IL_5J7L_270

Geometric discrepancy: 0.1622

The information below is about IL_5J7L_270

Detailed Annotation

7x7 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_29198.2

Basepair signature

cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9HA5|1|A|G|856
9HA5|1|A|G|857
9HA5|1|A|G|858
9HA5|1|A|G|859
9HA5|1|A|U|860
9HA5|1|A|A|861
9HA5|1|A|G|862
*
9HA5|1|A|C|915
9HA5|1|A|G|916
9HA5|1|A|A|917
9HA5|1|A|A|918
9HA5|1|A|U|919
9HA5|1|A|A|920
9HA5|1|A|C|921

Current chains

Chain A

23S ribosomal RNA

Nearby chains