IL_9HA5_033

3D structure

PDB id

9HA5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_L2 precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9HA5|1|A|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HA5_033 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.1903

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

9HA5|1|A|C|1208
9HA5|1|A|U|1209
9HA5|1|A|G|1210
9HA5|1|A|C|1211
9HA5|1|A|G|1212
9HA5|1|A|A|1213
9HA5|1|A|A|1214
9HA5|1|A|G|1215
*
9HA5|1|A|U|1234
9HA5|1|A|G|1235
9HA5|1|A|G|1236
9HA5|1|A|A|1237
9HA5|1|A|G|1238

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Q

Large ribosomal subunit protein bL20