IL_9HA5_061

3D structure

PDB id

9HA5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_L2 precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HA5_061 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.1809

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9HA5|1|A|C|2652
9HA5|1|A|U|2653
9HA5|1|A|A|2654
9HA5|1|A|G|2655
9HA5|1|A|U|2656
9HA5|1|A|A|2657
9HA5|1|A|C|2658
*
9HA5|1|A|G|2663
9HA5|1|A|G|2664
9HA5|1|A|A|2665
9HA5|1|A|C|2666
9HA5|1|A|C|2667
9HA5|1|A|G|2668

Current chains

Chain A

23S ribosomal RNA

Nearby chains