IL_9HA6_001

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HA6_001 not in the Motif Atlas

Homologous match to IL_5J7L_245

Geometric discrepancy: 0.2067

The information below is about IL_5J7L_245

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_04021.2

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9HA6|1|A|G|24
9HA6|1|A|U|25
9HA6|1|A|G|26
9HA6|1|A|G|27
9HA6|1|A|A|28
9HA6|1|A|U|29
9HA6|1|A|G|30
*
9HA6|1|A|C|510
9HA6|1|A|U|511
9HA6|1|A|G|512
9HA6|1|A|A|513
9HA6|1|A|A|514
9HA6|1|A|A|515
9HA6|1|A|C|516

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL32

Chain Q

Large ribosomal subunit protein bL20

Chain S

Large ribosomal subunit protein uL22