3D structure

PDB id
9HA6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mature 50S subunit supplemented with Api137
Experimental method
ELECTRON MICROSCOPY
Resolution
3.08 Å

Loop

Sequence
CC*GAG
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9HA6_005 not in the Motif Atlas
Homologous match to IL_7A0S_005
Geometric discrepancy: 0.2403
The information below is about IL_7A0S_005
Detailed Annotation
Single stack bend
Broad Annotation
No text annotation
Motif group
IL_90729.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
30

Unit IDs

9HA6|1|A|C|183
9HA6|1|A|C|184
*
9HA6|1|A|G|212
9HA6|1|A|A|213
9HA6|1|A|G|214

Current chains

Chain A
23S ribosomal rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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