3D structure

PDB id
9HA6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mature 50S subunit supplemented with Api137
Experimental method
ELECTRON MICROSCOPY
Resolution
3.08 Å

Loop

Sequence
CCU*AUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9HA6_013 not in the Motif Atlas
Homologous match to IL_4WF9_017
Geometric discrepancy: 0.1761
The information below is about IL_4WF9_017
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_07785.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
33

Unit IDs

9HA6|1|A|C|564
9HA6|1|A|C|565
9HA6|1|A|U|566
*
9HA6|1|A|A|575
9HA6|1|A|U|576
9HA6|1|A|G|577

Current chains

Chain A
23S ribosomal rRNA

Nearby chains

Chain E
Large ribosomal subunit protein uL4
Chain L
Large ribosomal subunit protein uL15
Chain Q
Large ribosomal subunit protein bL20
Chain R
Large ribosomal subunit protein bL21

Coloring options:


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