IL_9HA6_019

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HA6_019 not in the Motif Atlas

Homologous match to IL_9DFE_019

Geometric discrepancy: 0.2364

The information below is about IL_9DFE_019

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9HA6|1|A|U|703
9HA6|1|A|G|704
9HA6|1|A|A|705
9HA6|1|A|A|706
9HA6|1|A|G|707
*
9HA6|1|A|U|724
9HA6|1|A|G|725
9HA6|1|A|G|726
9HA6|1|A|A|727
9HA6|1|A|G|728

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2