IL_9HA6_033

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

9HA6|1|A|A|1156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HA6_033 not in the Motif Atlas

Homologous match to IL_5J7L_277

Geometric discrepancy: 0.1515

The information below is about IL_5J7L_277

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

9HA6|1|A|C|998
9HA6|1|A|U|999
9HA6|1|A|A|1000
9HA6|1|A|A|1001
9HA6|1|A|G|1002
*
9HA6|1|A|C|1153
9HA6|1|A|G|1154
9HA6|1|A|A|1155
9HA6|1|A|A|1156
9HA6|1|A|G|1157

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain Q

Large ribosomal subunit protein bL20

Chain R

Large ribosomal subunit protein bL21

Chain Z

Large ribosomal subunit protein uL30